PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.C01016.1.p
Common NameLOC105950807, MIMGU_mgv1a018390mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family Trihelix
Protein Properties Length: 385aa    MW: 44748.1 Da    PI: 6.5715
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.C01016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.21.3e-2490184186
          trihelix   1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                       +Wt+ +v++Li+a++++ e+ +++         +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++  ++d 
  Migut.C01016.1.p  90 KWTDTMVRLLITAVSYISEEASSEHskrnlsnlQKKGKWKSVSKAMAERGHLVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPELLDV 182
                       7**************999988865335667778**********************************************6699**99999999 PP

          trihelix  85 le 86 
                       ++
  Migut.C01016.1.p 183 MD 184
                       87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2388210No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEGDLSSPST MRGNPSYGGF DFHLHHNPNR RQPSSIAHHT IHENFPLTIR STQDFDQSIY  60
GKSASEEDEP SVIEERKGKK SSSSPWQRVK WTDTMVRLLI TAVSYISEEA SSEHSKRNLS  120
NLQKKGKWKS VSKAMAERGH LVSPQQCEDK FNDLNKRYKR LNEILGRGTS CEVVENPELL  180
DVMDRISEKN KEEVRKILSS KHLHYEEMCS YHNGNRLHLP HDSDLQRSLK LALLPKDDCD  240
GNEFDDLDGS DENRVVDLDP GRGPGKRVKH SEENLEDFGV KDSLNALDCN KTFDENQAPN  300
EDANTSTLQK QWMSRRNVQL EEKRLHIQVQ TLELEKERFK WQRFCRKQDR ELEMMKMEIE  360
RMKLENERMA LELRRKEMGI IDNN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012829627.10.0PREDICTED: uncharacterized protein LOC105950807
TrEMBLA0A022PT850.0A0A022PT85_ERYGU; Uncharacterized protein
STRINGVIT_18s0072g00690.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-123sequence-specific DNA binding transcription factors